MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635905.1: 4552076-4552135 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUCACAGCAACAGUCUGGACAUAUGGAUACAGUGAUCAGGUUACGAUGGAUUGAAAAGUAAGAACCACAUAGCUUGGUCACGAUGUCCAUUUGACCAGAAAAUCUUCAACCUUCAGA
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Structure
        10          20        30        40        50          
UUUUUCACAGCAACAGU--|   A  U       CA            CGA   AUUGAAA 
                   CUGG CA AUGGAUA  GUGAUCAGGUUA   UGG       \
                   GACC GU UACCUGU  CACUGGUUCGAU   ACC       A
AGACUUCCAACUUCUAAAA^   A  U       AG            AC-   AAGAAUG 
.       110       100        90        80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-1329_5p
mirBase accessionNone
Sequence 
0- UACAGUGAUCAGGUUACGAUGGA -23
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Star sequence

Cmi-Mir-1329_3p*
mirBase accessionNone
Sequence 
38- CACAUAGCUUGGUCACGAUGUC -60
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