MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-1329-v2

Family name MIR-1329 (all species)
Seed CAGUGAU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1329
Paralogues Cpi-Mir-1329-v1 
Orthologues Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v2  Cmi-Mir-1329  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v2  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584609: 7904402-7904460 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1329-v2)		 Mir-1329-v1 JH584609: 7904401-7904461 [-] UCSC Ensembl
Mir-1329-v2 JH584609: 7904402-7904460 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUGGGUCUCUCAGUCUGGUUGUAGGGAUACAGUGAUCAGGUUACGAGGGAUUUCUCAAGUAACAACCUCGUAGCUCGGUCACGAUAUCCCUAUGACUUAGAUAACAACAGGUUUAAC
Get precursor sequence
Structure
        10          20        30        40        50         
UGAUGGGUCUCUCAGUCU--|  UG        CA      AG         GAUUUCUC 
                    GGU  UAGGGAUA  GUGAUC  GUUACGAGG        \
                    UCA  AUCCCUAU  CACUGG  CGAUGCUCC        A
CAAUUUGGACAACAAUAGAU^  GU        AG      CU         AACAAUGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-1329-v2_5p
mirBase accessionMIMAT0037912
Sequence 
0- ACAGUGAUCAGGUUACGAGGGAU -23
Get sequence
Star sequence

Cpi-Mir-1329-v2_3p*
mirBase accessionNone
Sequence 
37- CCUCGUAGCUCGGUCACGAUAU -59
Get sequence