MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010047.1: 20519608-20519668 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGGGGGAUCUUGGUUUGGUUUUAGGGGUACAGUGACCAGGUUACGAUGGAUUUCUCAAGUGAGAACCUCGUAGCUGGGUCACAAUAUCUGUAUGACUCCAUCUUCCCUCCCCCGUAUU
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Structure
        10          20        30        40        50        60
GGAAGGGGGAUCUUGGUUU--|   U  G     CA      A        U  AUUUCUC 
                     GGUU UA GGGUA  GUGACC GGUUACGA GG       A
                     UCAG AU UCUAU  CACUGG UCGAUGCU CC       A
UUAUGCCCCCUCCCUUCUACC^   U  G     AA      G        -  AAGAGUG 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-1329_5p (predicted)

mirBase accessionNone
Sequence
0- UACAGUGACCAGGUUACGAUGGA -23
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Star sequence

Laf-Mir-1329_3p* (predicted)

mirBase accessionNone
Sequence
39- CUCGUAGCUGGGUCACAAUAUC -61
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