MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-1329
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL834685.1: 638198-638259 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAGGAAUCUUGGUCUGGUUGUAGGGGUACAGUGAUCGGGUUAUGAUGGAUUUUCUCAAGUAAUCACCUCAUAACUCAGUCACGAUAUCCAUAUGACUCAGAUGGCUGCAGUUUUAGAC
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Structure
        10         20         30        40        50        60 
GAGGGAGGAAUCUUGGU-   -| UG  G     CA     C         U  AUUUUCUC 
                  CUG GU  UA GGGUA  GUGAU GGGUUAUGA GG        \
                  GAC CA  AU CCUAU  CACUG CUCAAUACU CC        A
CAGAUUUUGACGUCGGUA   U^ GU  A     AG     A         -  ACUAAUGA 
120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-1329_5p
mirBase accessionNone
Sequence 
0- UACAGUGAUCGGGUUAUGAUGGA -23
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Star sequence

Sha-Mir-1329_3p*
mirBase accessionMIMAT0022773
Sequence 
40- CUCAUAACUCAGUCACGAUAUC -62
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