MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01008233.1: 6276173-6276233 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAGAUGAACCUGCGUCUGGCUGUAGGGGUACAGUGAUCAGGUUACGACGGAUUUCUCUAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUCAGAUAACAACAAGUGUGACC
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Structure
        10         20         30        40        50        60
UAGAGAUGAACCUGCGU-   -|CU         CA               C  AUUUCUC 
                  CUG G  GUAGGGGUA  GUGAUCAGGUUACGA GG       U
                  GAC C  UAUCCCUAU  CACUAGUUCGAUGCU CC       A
CCAGUGUGAACAACAAUA   U^AG         AG               -  AACAAUG 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-1329_5p (predicted)

mirBase accessionNone
Sequence
0- UACAGUGAUCAGGUUACGACGGA -23
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Star sequence

Spt-Mir-1329_3p* (predicted)

mirBase accessionNone
Sequence
38- CCUCGUAGCUUGAUCACGAUAUC -61
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