MirGeneDB ID | Spt-Mir-1329 |
---|---|
Family name | MIR-1329 (all species) |
Seed | ACAGUGA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-1329-v1 Aca-Mir-1329-v2 Ami-Mir-1329 Bta-Mir-1329 Cli-Mir-1329-v1 Cli-Mir-1329-v2 Cmi-Mir-1329 Cpi-Mir-1329-v1 Cpi-Mir-1329-v2 Ebu-Mir-1329 Eca-Mir-1329 Gga-Mir-1329-v1 Gga-Mir-1329-v2 Gja-Mir-1329-v1 Gja-Mir-1329-v2 Laf-Mir-1329 Mdo-Mir-1329 Mmr-Mir-1329 Mun-Mir-1329 Neu-Mir-1329 Oan-Mir-1329-v1 Oan-Mir-1329-v2 Pbv-Mir-1329 Pma-Mir-1329 Sha-Mir-1329 Sto-Mir-1329 Tgu-Mir-1329-v1 Tgu-Mir-1329-v2 Xla-Mir-1329-P1 Xla-Mir-1329-P2 Xtr-Mir-1329 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008233.1: 6276173-6276233 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UAGAGAUGAACCUGCGUCUGGCUGUAGGGGUACAGUGAUCAGGUUACGACGGAUUUCUCUAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUCAGAUAACAACAAGUGUGACCGet precursor sequence |
Structure | 10 20 30 40 50 60 UAGAGAUGAACCUGCGU- -|CU CA C AUUUCUC CUG G GUAGGGGUA GUGAUCAGGUUACGA GG U GAC C UAUCCCUAU CACUAGUUCGAUGCU CC A CCAGUGUGAACAACAAUA U^AG AG - AACAAUG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Spt-Mir-1329_5p (predicted) |
mirBase accession | None |
Sequence |
0- UACAGUGAUCAGGUUACGACGGA -23
Get sequence
|
Star sequence | Spt-Mir-1329_3p* (predicted) |
mirBase accession | None |
Sequence |
38- CCUCGUAGCUUGAUCACGAUAUC -61
Get sequence
|