MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1329
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Mdo-Mir-1329  Mun-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711240.1: 10607162-10607221 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UAGAGAUGCAUCUUGGUCUGGUUGUAGAGAUACAGUGAUCAGGUUACGAUGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACAAUAUCCCUAUGACUUAGAUAACAACAUAUUUAACC
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Structure
        10          20        30        40        50         
UAGAGAUGCAUCUUGGU-  -|  UG   A    CA               UGAUUUCUC 
                  CU GGU  UAG GAUA  GUGAUCAGGUUACGA         A
                  GA UCA  AUC CUAU  CACUAGUUCGAUGCU         A
CCAAUUUAUACAACAAUA  U^  GU   C    AA               CCAACAAUG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-1329_5p

mirBase accessionMIMAT0038311
Sequence
0- UACAGUGAUCAGGUUACGAUGA -22
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Star sequence

Ami-Mir-1329_3p* (predicted)

mirBase accessionNone
Sequence
38- CUCGUAGCUUGAUCACAAUAUC -60
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