MirGeneDB ID | Ami-Mir-139 |
Family name |
MIR-139 (all species) |
Seed |
CUACAGU |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-139
|
Paralogues |
|
Orthologues |
Aca-Mir-139
Bta-Mir-139
Cfa-Mir-139
Cja-Mir-139
Cli-Mir-139
Cmi-Mir-139
Cpi-Mir-139
Cpo-Mir-139
Dno-Mir-139
Dre-Mir-139
Eca-Mir-139
Ete-Mir-139
Gja-Mir-139
Gmo-Mir-139
Hsa-Mir-139
Laf-Mir-139
Lch-Mir-139
Loc-Mir-139
Mal-Mir-139
Mdo-Mir-139
Mml-Mir-139
Mmr-Mir-139
Mmu-Mir-139
Mun-Mir-139
Neu-Mir-139
Oan-Mir-139
Ocu-Mir-139
Pab-Mir-139
Pbv-Mir-139
Rno-Mir-139
Sha-Mir-139
Spt-Mir-139
Sto-Mir-139
Tgu-Mir-139
Tni-Mir-139
Xla-Mir-139-P1
Xla-Mir-139-P2
Xtr-Mir-139
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713116.1: 33815-33873 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCGGCGCGGCGCCGACAGGCCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUUCUAAGCGACUGGAGAUACAGCCCUGUCGGAAUAACAGCCAGCGCCAAUGCCUUCAGCCCACG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGGCGCGGCGCCGACAG - - -| U A GUUUC
GC CUGGCUG UAUUCU ACAG GC UGUGUCUCCAGU \
CG GACCGAC AUAAGG UGUC CG ACAUAGAGGUCA U
GCACCCGACUUCCGUAAC C A C^ C - GCGAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ami-Mir-139_5p |
mirBase accession | MIMAT0038158 |
Sequence |
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
|
Star sequence |
Ami-Mir-139_3p* |
mirBase accession | MIMAT0038159 |
Sequence |
36- UGGAGAUACAGCCCUGUCGGAAU -59
Get sequence
|