MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015176525.1: 108396-108454 [-]
Precursor
(pre-Mir +30nt flank)
GAGCAGCCGGUGAGAAAGGUCUGGCCGUAUUCUACAGUGCAUGUGUCUCCAGUGUUUCUUAGCGACUGGAGAUACAGCCCUGUUGGAAUAACAGCCAGUGCCGCGAGCGUCGGGAAGCA
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Structure
        10        20          30         40        50         
GAGCAGCCGGUGAGAAAG  -     CG-      -|   U  A            GUUUC 
                  GU CUGGC   UAUUCU ACAG GC UGUGUCUCCAGU     \
                  CG GACCG   AUAAGG UGUC CG ACAUAGAGGUCA     U
ACGAAGGGCUGCGAGCGC  U     ACA      U^   C  -            GCGAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Gja-Mir-139_3p* (predicted)
mirBase accessionNone
Sequence 
36- UGGAGAUACAGCCCUGUUGGAAU -59
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