MirGeneDB ID | Mmr-Mir-139 |
Family name |
MIR-139 (all species) |
Seed |
CUACAGU |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-139
Ami-Mir-139
Bta-Mir-139
Cfa-Mir-139
Cja-Mir-139
Cli-Mir-139
Cmi-Mir-139
Cpi-Mir-139
Cpo-Mir-139
Dno-Mir-139
Dre-Mir-139
Eca-Mir-139
Ete-Mir-139
Gja-Mir-139
Gmo-Mir-139
Hsa-Mir-139
Laf-Mir-139
Lch-Mir-139
Loc-Mir-139
Mal-Mir-139
Mdo-Mir-139
Mml-Mir-139
Mmu-Mir-139
Mun-Mir-139
Neu-Mir-139
Oan-Mir-139
Ocu-Mir-139
Pab-Mir-139
Pbv-Mir-139
Rno-Mir-139
Sha-Mir-139
Spt-Mir-139
Sto-Mir-139
Tgu-Mir-139
Tni-Mir-139
Xla-Mir-139-P1
Xla-Mir-139-P2
Xtr-Mir-139
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007665.1: 57556817-57556875 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGAGGCGCCAGGACUGGGCUCAGGUGUAUUCUACAGUGCACGUGUCUCCAGUGUGGCUCGGAGGCUGGAGACGCGGCCCUGUUGGAGUAACAACUGAAGCCGGAGUCUGCGAGGGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGAGGCGCCAGGACUGG - G - -| U A GUGGC
GC UCAG UG UAUUCU ACAG GC CGUGUCUCCAGU \
CG AGUC AC AUGAGG UGUC CG GCGCAGAGGUCG U
GGGGGGAGCGUCUGAGGC A A A U^ C - GAGGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mmr-Mir-139_5p |
mirBase accession | None |
Sequence |
0- UCUACAGUGCACGUGUCUCCAGU -23
Get sequence
|
Star sequence |
Mmr-Mir-139_3p* |
mirBase accession | None |
Sequence |
36- UGGAGACGCGGCCCUGUUGGAGU -59
Get sequence
|