MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021925.1: 65053661-65053719 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGAGGCGCCGGGACUGGCUCAGGUGUAUUCUACAGUGCACGUGUCUCCAGUGUGGCUCGGAGGCUGGAGACGCGGCCCUGUUGGAGUAACAACUGAAGCCGGAGUCUGCGAAGGGUG
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Structure
        10        20          30         40        50         
CGGGAGGCGCCGGGACUG  -    G  -      -|   U  A            GUGGC 
                  GC UCAG UG UAUUCU ACAG GC CGUGUCUCCAGU     \
                  CG AGUC AC AUGAGG UGUC CG GCGCAGAGGUCG     U
GUGGGAAGCGUCUGAGGC  A    A  A      U^   C  -            GAGGC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCACGUGUCUCCAGU -23
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Star sequence

Cja-Mir-139_3p* (predicted)
mirBase accessionNone
Sequence 
36- UGGAGACGCGGCCCUGUUGGAGU -59
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