MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-139
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(danRer11)		 LKPD01049450.1: 531-590 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUCGGCUGUAGUUUGGUCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUUUCUAUGGCGACUGGGGAGGCAGCGCUGUUGGAAUAACAACCAGAACCGCUGAACACCAACCGGC
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Structure
        10         20         30         40        50         
CAGUUCGGCUGUAGUUUGG-     C  -      -|      A   G        GUUUC 
                    UCUGG UG UAUUCU ACAGUGC UGU UCUCCAGU     U
                    AGACC AC AUAAGG UGUCGCG ACG AGGGGUCA     A
CGGCCAACCACAAGUCGCCA     A  A      U^      -   G        GCGGU 
.       110       100        90        80         70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-139_5p
mirBase accessionMIMAT0003349
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Proposed targets TargetScanFish: dre-miR-139
Star sequence

Dre-Mir-139_3p*
mirBase accessionMIMAT0032008
Sequence 
37- UGGGGAGGCAGCGCUGUUGGAAU -60
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