MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI637794.1: 117-174 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGGUGAGCGGAGCCUGGCUUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGAUGCAAACAACUGGAGAGACAGCCCUGUUGGAAUAACAUUCAAGACCAAUCACAACGGCAACAG
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Structure
        10         20         30         40        50        
GGAGGUGAGCGGAGCCUGG-    GC  -      -|   U  A   G        GAUG 
                    CUUG  UG UAUUCU ACAG GC UGU UCUCCAGU    C
                    GAAC  AC AUAAGG UGUC CG ACA AGAGGUCA    A
GACAACGGCAACACUAACCA    UU  A      U^   C  -   G        ACAA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Cmi-Mir-139_3p*
mirBase accessionNone
Sequence 
35- UGGAGAGACAGCCCUGUUGGAAU -58
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