MirGeneDB ID | Sha-Mir-139 |
Family name |
MIR-139 (all species) |
Seed |
CUACAGU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
sha-mir-139
|
Paralogues |
|
Orthologues |
Aca-Mir-139
Ami-Mir-139
Bta-Mir-139
Cfa-Mir-139
Cja-Mir-139
Cli-Mir-139
Cmi-Mir-139
Cpi-Mir-139
Cpo-Mir-139
Dno-Mir-139
Dre-Mir-139
Eca-Mir-139
Ete-Mir-139
Gja-Mir-139
Gmo-Mir-139
Hsa-Mir-139
Laf-Mir-139
Lch-Mir-139
Loc-Mir-139
Mal-Mir-139
Mdo-Mir-139
Mml-Mir-139
Mmr-Mir-139
Mmu-Mir-139
Mun-Mir-139
Neu-Mir-139
Oan-Mir-139
Ocu-Mir-139
Pab-Mir-139
Pbv-Mir-139
Rno-Mir-139
Spt-Mir-139
Sto-Mir-139
Tgu-Mir-139
Tni-Mir-139
Xla-Mir-139-P1
Xla-Mir-139-P2
Xtr-Mir-139
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (DEVIL_add) |
GL849732.1: 511096-511154 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGAUGAAUCCAUAGGUGGCCCGGGUGUAUUCUACAGUGCAUGUGUCUCCAGUGUGACUAAGGGACUGGAGAUACGGCCCUGUUGGAAUAACAACCGAAGCCCAUGUCUUCAUGGAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGAUGAAUCCAUAGGUG C- G - -| U A GUGAC
GC CGG UG UAUUCU ACAG GC UGUGUCUCCAGU \
CG GCC AC AUAAGG UGUC CG GCAUAGAGGUCA U
CCAAGGUACUUCUGUACC AA A A U^ C - GGGAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Although usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
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Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-139_5p |
mirBase accession | MIMAT0022803 |
Sequence |
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
|
Star sequence |
Sha-Mir-139_3p* |
mirBase accession | None |
Sequence |
36- UGGAGAUACGGCCCUGUUGGAAU -59
Get sequence
|