MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054688.2: 74654314-74654372 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGAGGCGCCGGGACUGGCUCAGGUGUAUUCUACAGUGCACGUGUCUCCAGUGUGGCUCGGAGGCUGGAGACGCGGCCCUGUUGGAGUAACAACUGAAGCCGGAGUCUGCGAAGGGUG
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Structure
        10        20          30         40        50         
UGGGAGGCGCCGGGACUG  -    G  -      -|   U  A            GUGGC 
                  GC UCAG UG UAUUCU ACAG GC CGUGUCUCCAGU     \
                  CG AGUC AC AUGAGG UGUC CG GCGCAGAGGUCG     U
GUGGGAAGCGUCUGAGGC  A    A  A      U^   C  -            GAGGC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCACGUGUCUCCAGU -23
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Co-mature sequence

Pab-Mir-139_3p
mirBase accessionNone
Sequence 
36- UGGAGACGCGGCCCUGUUGGAGU -59
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