MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Lch-Mir-139  Loc-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmu-Mir-139  Mun-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884890.1: 279639-279700 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAGGACGAUCCUCUUGGCUUGGUUGUAUUCUACAGUGCAUGUGUCUCCAGUAUGUUAGUGAUGCUACUGGAGACCCAGCUCUGUUGGAAUAACAACCAGGACCCACUGCAACGCUACCAG
Get precursor sequence
Structure
        10         20         30         40        50        60
AGGAGGACGAUCCUCUUGG-        -      -|   U  A  U         AUGUUA 
                    CUUGGUUG UAUUCU ACAG GC UG GUCUCCAGU      G
                    GGACCAAC AUAAGG UGUC CG AC CAGAGGUCA      U
GACCAUCGCAACGUCACCCA        A      U^   U  -  C         UCGUAG 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
Star sequence

Mal-Mir-139_3p*
mirBase accessionNone
Sequence 
39- UGGAGACCCAGCUCUGUUGGAAU -62
Get sequence