MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LepOcu1)		 LG3: 12274670-12274728 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUGUGCCAAGUUGAUGGUCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGAUCUUAUGCAACUGGAGAUACAGCCCUGUUGGAAUAACAUUCAGAACCAAUAUCGUCUGGAAAAU
Get precursor sequence
Structure
        10         20         30         40        50         
UGAUGUGCCAAGUUGAUGG-    GC  -      -|   U  A            GAUCU 
                    UCUG  UG UAUUCU ACAG GC UGUGUCUCCAGU     \
                    AGAC  AC AUAAGG UGUC CG ACAUAGAGGUCA     U
UAAAAGGUCUGCUAUAACCA    UU  A      U^   C  -            ACGUA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-139_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
Get sequence
Star sequence

Loc-Mir-139_3p*
mirBase accessionNone
Sequence 
36- UGGAGAUACAGCCCUGUUGGAAU -59
Get sequence