MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-139
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(xenTro9_add)		 chr2: 170077882-170077940 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGGGACCGCCGGUGAGGCCUGGGUGUAUUCUACAGUGCAUGUGUCUCCAGUCAUAUAGAGGCACUGGGGAUACAGCUCUGUUGGAAUAACAAUCAGUGCCGCGUUCAGCGCUUUAUC
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Structure
        10        20          30         40        50         
AGGGGGACCGCCGGUGAG  -   GG  -      -|   U  A            CAUAU 
                  GC CUG  UG UAUUCU ACAG GC UGUGUCUCCAGU     \
                  CG GAC  AC AUAAGG UGUC CG ACAUAGGGGUCA     A
CUAUUUCGCGACUUGCGC  U   UA  A      U^   U  -            CGGAG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-139_5p
mirBase accessionMIMAT0003600
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Proposed targets TargetScanVert: xtr-miR-139
Star sequence

Xtr-Mir-139_3p*
mirBase accessionNone
Sequence 
36- UGGGGAUACAGCUCUGUUGGAAU -59
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