MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-139

Family name MIR-139 (all species)
Seed CUACAGU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-139
Paralogues
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xla-Mir-139-P1  Xla-Mir-139-P2  Xtr-Mir-139 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)		 scaffold1323: 18345-18403 [+]
Precursor
(pre-Mir +30nt flank)
GCAGGACGGACACGCCAGGCCUGGCUGUAUUCUACAGUGCAUGUGUCUCCAGUGUGAGUAAGUGACUGGAGAUGCAGCCCUGUUGGAAUAACAACCGGGACCACAUCAUCAGCUGCGAU
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Structure
        10         20         30         40        50         
GCAGGACGGACACGCCAGG-     C  -      -|   U  A            GUGAG 
                    CCUGG UG UAUUCU ACAG GC UGUGUCUCCAGU     \
                    GGGCC AC AUAAGG UGUC CG ACGUAGAGGUCA     U
UAGCGUCGACUACUACACCA     A  A      U^   C  -            GUGAA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-139_5p
mirBase accessionMIMAT0038525
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Cli-Mir-139_3p*
mirBase accessionMIMAT0038526
Sequence 
36- UGGAGAUGCAGCCCUGUUGGAAU -59
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