MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-139-P2

Family name MIR-139 (all species)
Seed CUACAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-139-P1 
Orthologues Aca-Mir-139  Ami-Mir-139  Bta-Mir-139  Cfa-Mir-139  Cja-Mir-139  Cli-Mir-139  Cmi-Mir-139  Cpi-Mir-139  Cpo-Mir-139  Dno-Mir-139  Dre-Mir-139  Eca-Mir-139  Ete-Mir-139  Gja-Mir-139  Gmo-Mir-139  Hsa-Mir-139  Laf-Mir-139  Lch-Mir-139  Loc-Mir-139  Mal-Mir-139  Mdo-Mir-139  Mml-Mir-139  Mmr-Mir-139  Mmu-Mir-139  Mun-Mir-139  Neu-Mir-139  Oan-Mir-139  Ocu-Mir-139  Pab-Mir-139  Pbv-Mir-139  Rno-Mir-139  Sha-Mir-139  Spt-Mir-139  Sto-Mir-139  Tgu-Mir-139  Tni-Mir-139  Xtr-Mir-139 
Node of Origin (locus) X. laevis
Node of Origin (family) Gnathostomata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 157598776-157598836 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUGGAUGAGUGGGGAGGCCUGGGUGUAUUCUACAGUGCAUGUGUCUCCAGUCGUAUAUAGAGGAUCUGGGGAUACAGCUCUGUUGGAAUAACAAUCAGUGCCACGUGCAGCGAUUCAUC
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Structure
        10        20          30         40        50          
AUGUGGAUGAGUGGGGAG  -   GG  -      -|   U  A           UCGUAUA 
                  GC CUG  UG UAUUCU ACAG GC UGUGUCUCCAG       \
                  CG GAC  AC AUAAGG UGUC CG ACAUAGGGGUC       U
CUACUUAGCGACGUGCAC  U   UA  A      U^   U  -           UAGGAGA 
 .       110       100        90        80         70
Deep sequencing
3' NTU No
MotifsNo
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-139-P2_5p
mirBase accessionNone
Sequence 
0- UCUACAGUGCAUGUGUCUCCAGU -23
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Star sequence

Xla-Mir-139-P2_3p*
mirBase accessionNone
Sequence 
38- UGGGGAUACAGCUCUGUUGGAAU -61
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