MirGeneDB ID | Ebu-Mir-122-P3 |
Family name |
MIR-122 (all species) |
Seed |
GGAGUGU |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-122-P4
|
Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Eca-Mir-122
Ete-Mir-122
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xtr-Mir-122
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Vertebrata
|
Genome context (Eburgeri_3) |
FYBX02009997.1: 115281-115339 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUACAGUCAUGCUUGUUGCCUUCACAGCGAUGGAGUGUGACAAUGGUGUUUGUGUCUGUCAUGUUCAAACGCCAUUGUCACACUAAUUCGCUGAGGCAUGUAGUGCAGCAUGUUGAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUACAGUCAUGCUUGUU-----| UCA UGG UGUCUG
GCCU CAGCGA AGUGUGACAAUGGUGUUUG \
CGGA GUCGCU UCACACUGUUACCGCAAAC U
GGUAGUUGUACGACGUGAUGUA^ --- UAA UUGUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 5p read is mono-adenylated at the 3p end. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-122-P3_5p |
mirBase accession | None |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
Star sequence |
Ebu-Mir-122-P3_3p* |
mirBase accession | None |
Sequence |
37- AACGCCAUUGUCACACUAAUUC -59
Get sequence
|