| MirGeneDB ID | Dre-Mir-122 |
|---|
| Family name |
MIR-122 (all species) |
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| Seed |
GGAGUGU |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-122
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Eca-Mir-122
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmr-Mir-122-as
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(danRer11) |
chr21: 10881430-10881488 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCAACCAGUGUGUUUGUCCUCCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUAUCAUCUGUCGUCAAACGCCAUUAUCACACUAAAUAGCCACGGUGUGACCGCUCAACCUCCUCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCAACCAGUGUGUUUGUCCUC GA ------| C UAUCAU
CA GCUGUGG AGUGUGA AAUGGUGUUUG \
GU UGGCACC UCACACU UUACCGCAAAC C
CGACUCCUCCAACUCGCCA--- G- GAUAAA^ A UGCUGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-122_5p |
| mirBase accession | MIMAT0001818 |
|---|
| Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-122
|
|---|
| Star sequence |
Dre-Mir-122_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AACGCCAUUAUCACACUAAAUA -59
Get sequence
|
|---|
