MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-122-P6

Family name MIR-122 (all species)
Seed GGAGUGU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-122
Paralogues Xla-Mir-122-P5 
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Eca-Mir-122  Ete-Mir-122  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xtr-Mir-122 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030725.1: 169871921-169871978 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUAUGCUGGAAAUGGACUGCUGGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCAGAGCUAUCAAACGCCAUUAUCACACUAAUGAGCUACUGCAGGCACAUUCACUCACUCACUC
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Structure
        10          20        30        40        50        
UGAUAUGCUGGAAAUGGA--|   UGG    GUGG       C           UGUCA 
                    CUGC   AGCU    AGUGUGA AAUGGUGUUUG     G
                    GACG   UCGA    UCACACU UUACCGCAAAC     A
CUCACUCACUCACUUACACG^   UCA    GUAA       A           UAUCG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-122-P6_5p
mirBase accessionMIMAT0046426
Sequence 
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Xla-Mir-122-P6_3p*
mirBase accessionMIMAT0046427
Sequence 
36- AACGCCAUUAUCACACUAAUGA -58
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