MirGeneDB ID | Eca-Mir-122 |
Family name |
MIR-122 (all species) |
Seed |
GGAGUGU |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-122
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Paralogues |
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Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmr-Mir-122-as
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009155.1: 79152587-79152644 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CACGGCUACAGAUUUUCCUUAGCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCCAAACUAUCAAACGCCAUUAUCACACUAAAUAGCUACUGUUAGGCAAUCCUUCCACUCAGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CACGGCUACAGAUUUUC- -| GG C UGUCC
CUUAGCAG AGCUGU AGUGUGA AAUGGUGUUUG A
GGAUUGUC UCGAUA UCACACU UUACCGCAAAC A
GUGACUCACCUUCCUAAC A^ AA A UAUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 5p read is mono-adenylated at the 3p end. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-122_5p |
mirBase accession | MIMAT0012995 |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
Star sequence |
Eca-Mir-122_3p* |
mirBase accession | None |
Sequence |
36- AACGCCAUUAUCACACUAAAUA -58
Get sequence
|