MirGeneDB ID | Sto-Mir-122 |
Family name |
MIR-122 (all species) |
Seed |
GGAGUGU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
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Paralogues |
|
Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Eca-Mir-122
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmr-Mir-122-as
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01002600.1: 28843-28901 [-]
|
Precursor (pre-Mir +30nt flank) |
GCGCCGUCGCUUCUGUUCUGCUGGUAGCUGUGGAGUGUGACAAUGGUGUUUGUGUGGAGUUAAAUCAAACGCCAUUAUCACACUAAAUAGCUCGGGUGGGAACCAGCCACACAUACACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGCCGUCGCUUCUGUU---|UG GGU GG C UGUGGA
C CU AGCUGU AGUGUGA AAUGGUGUUUG \
G GG UCGAUA UCACACU UUACCGCAAAC G
ACACAUACACACCGACCAAG^GU GC- AA A UAAAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Sto-Mir-122_5p |
mirBase accession | None |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUGU -23
Get sequence
|
Star sequence |
Sto-Mir-122_3p* |
mirBase accession | None |
Sequence |
36- AAACGCCAUUAUCACACUAAAUA -59
Get sequence
|