MirGeneDB ID | Gja-Mir-122 |
Family name |
MIR-122 (all species) |
Seed |
GGAGUGU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Eca-Mir-122
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmr-Mir-122-as
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015169783.1: 601900-601957 [+]
|
Precursor (pre-Mir +30nt flank) |
UUCCCGAAGGCCUCUUUCCUGCUCGAGCCGUGGAGUGUGACAAUGGUGUUUGUAUCCAAUCUGUCAAACGCCAUUAUCACACUAAAUAGCUCCUGUUCGAUAACUCGUCAGUUGAGCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCCGAAGGCCUCUUU--|CU UC CG GG C UAUCC
C GC GAGC U AGUGUGA AAUGGUGUUUG A
G UG CUCG A UCACACU UUACCGCAAAC A
GCGAGUUGACUGCUCAAUA^CU UC AU AA A UGUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gja-Mir-122_5p |
mirBase accession | None |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
Star sequence |
Gja-Mir-122_3p* |
mirBase accession | None |
Sequence |
36- AACGCCAUUAUCACACUAAAUA -58
Get sequence
|