MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021927.1: 96496673-96496730 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGCUACAGAUUUUCCUUAGCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCUAAACUAUCAAACGCCAUUAUCACACUAAAUAGCUACUGCUAGGCAAUCCCUCGAUAAAUGU
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Structure
        10         20         30        40        50        
CAUGGCUACAGAUUUUC-        -|     GG       C           UGUCU 
                  CUUAGCAG AGCUGU  AGUGUGA AAUGGUGUUUG     A
                  GGAUCGUC UCGAUA  UCACACU UUACCGCAAAC     A
UGUAAAUAGCUCCCUAAC        A^     AA       A           UAUCA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-122_5p
mirBase accessionNone
Sequence 
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Cja-Mir-122_3p* (predicted)
mirBase accessionNone
Sequence 
36- AACGCCAUUAUCACACUAAAUA -58
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