| MirGeneDB ID | Loc-Mir-122 |
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| Family name |
MIR-122 (all species) |
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| Seed |
GGAGUGU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Eca-Mir-122
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmr-Mir-122-as
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(LepOcu1) |
LG2: 49304315-49304372 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGAUCUCUCAGCCCUGGCUUUCAAAGCUGUGGAGUGUGACAAUGGUGUUUGUGUGACUGAUAUCAAACGCCAUUAUCACACUAAAUAGCUAUGGUAAGACACUUUGCUUCUUCCACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGAUCUCUCAGCCCUGG- -| A GG C UGUGA
CUU UCA AGCUGU AGUGUGA AAUGGUGUUUG C
GAA GGU UCGAUA UCACACU UUACCGCAAAC U
CCACCUUCUUCGUUUCACA U^ A AA A UAUAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-122_5p |
| mirBase accession | None |
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| Sequence |
0- UGGAGUGUGACAAUGGUGUUUGU -23
Get sequence
|
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| Star sequence |
Loc-Mir-122_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AAACGCCAUUAUCACACUAAAUA -58
Get sequence
|
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