MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046069.1: 32474024-32474085 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGACGCACAGAGCUCCCUGGCGUGGCUGUGGAGUGUGACUAUGGUGUUUGCGUUCUCGUCUGCGUCCAAACGCCAUCCUCACACCACGCAGCCCCGGCACGGAUUCCCCUCCUCCUCGUC
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Structure
        10          20        30        40        50        60
CUUGACGCACAGAGCUC-  -| G  U       GA      CU          CGUUCUC 
                  CC UG CG GGCUGUG  GUGUGA  AUGGUGUUUG       G
                  GG AC GC CCGACGC  CACACU  UACCGCAAAC       U
CUGCUCCUCCUCCCCUUA  C^ G  C       AC      CC          CUGCGUC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-122_5p
mirBase accessionNone
Sequence 
0- UGGAGUGUGACUAUGGUGUUUG -22
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Star sequence

Pma-Mir-122_3p*
mirBase accessionNone
Sequence 
40- AACGCCAUCCUCACACCACGCA -62
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