MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 4: 6516674-6516731 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCACAGAGCCCCCUCUUCUCCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCCUUUCUUUCAAACGCCAUUAUCACACUAAAUAGCUACAGUGUGAAAAGAACCUCAACACACC
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Structure
        10        20          30        40        50        
GGCCACAGAGCCCCCUCUUCUCCAG--|     GG       C           UGUCC 
                           AGCUGU  AGUGUGA AAUGGUGUUUG     U
                           UCGAUA  UCACACU UUACCGCAAAC     U
CCACACAACUCCAAGAAAAGUGUGACA^     AA       A           UUUCU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-122_5p
mirBase accessionMIMAT0002992
Sequence 
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Tni-Mir-122_3p*
mirBase accessionNone
Sequence 
36- AACGCCAUUAUCACACUAAAUA -58
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