MirGeneDB ID | Neu-Mir-122 |
---|---|
Family name | MIR-122 (all species) |
Seed | GGAGUGU |
Species | Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-122 Ami-Mir-122 Bta-Mir-122 Cfa-Mir-122 Cja-Mir-122 Cli-Mir-122 Cmi-Mir-122 Cpi-Mir-122 Cpo-Mir-122 Dno-Mir-122 Dre-Mir-122 Ebu-Mir-122-P3 Ebu-Mir-122-P4 Eca-Mir-122 Ete-Mir-122 Gga-Mir-122-P1 Gga-Mir-122-P2 Gja-Mir-122 Gmo-Mir-122 Hsa-Mir-122 Laf-Mir-122 Lch-Mir-122 Loc-Mir-122 Mal-Mir-122 Mdo-Mir-122 Mml-Mir-122 Mmr-Mir-122 Mmr-Mir-122-as Mmu-Mir-122 Mun-Mir-122 Oan-Mir-122 Ocu-Mir-122 Pab-Mir-122 Pbv-Mir-122 Pma-Mir-122 Rno-Mir-122 Sha-Mir-122 Spt-Mir-122 Sto-Mir-122 Tgu-Mir-122 Tni-Mir-122 Xla-Mir-122-P5 Xla-Mir-122-P6 Xtr-Mir-122 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 431619590-431619647 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAGGCUGUGCAUUAUCCCCUGCCAGAGCUAUGGAGUGUGACAAUGGUGUUUGUGUCCAGUCUAUCAAACGCCAUUAUCACACUAAAUAGCUACUGUUGGGCAAUCCAUCUGUUCAGGCGet precursor sequence |
Structure | 10 20 30 40 50 CAGGCUGUGCAUUAUCC- GC -| GG C UGUCC CCU CAG AGCUAU AGUGUGA AAUGGUGUUUG A GGG GUC UCGAUA UCACACU UUACCGCAAAC G CGGACUUGUCUACCUAAC UU A^ AA A UAUCU 110 100 90 80 70 60 |
Deep sequencing | |
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Neu-Mir-122_5p |
mirBase accession | None |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
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|
Star sequence | Neu-Mir-122_3p* |
mirBase accession | None |
Sequence |
36- AACGCCAUUAUCACACUAAAUA -58
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