| MirGeneDB ID | Pab-Mir-122 |
|---|---|
| Family name | MIR-122 (all species) |
| Seed | GGAGUGU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-122 Ami-Mir-122 Bta-Mir-122 Cfa-Mir-122 Cja-Mir-122 Cli-Mir-122 Cmi-Mir-122 Cpi-Mir-122 Cpo-Mir-122 Dno-Mir-122 Dre-Mir-122 Ebu-Mir-122-P3 Ebu-Mir-122-P4 Eca-Mir-122 Ete-Mir-122 Gga-Mir-122-P1 Gga-Mir-122-P2 Gja-Mir-122 Gmo-Mir-122 Hsa-Mir-122 Laf-Mir-122 Lch-Mir-122 Loc-Mir-122 Mal-Mir-122 Mdo-Mir-122 Mml-Mir-122 Mmr-Mir-122 Mmr-Mir-122-as Mmu-Mir-122 Mun-Mir-122 Neu-Mir-122 Oan-Mir-122 Ocu-Mir-122 Pbv-Mir-122 Pma-Mir-122 Rno-Mir-122 Sha-Mir-122 Spt-Mir-122 Sto-Mir-122 Tgu-Mir-122 Tni-Mir-122 Xla-Mir-122-P5 Xla-Mir-122-P6 Xtr-Mir-122 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054696.2: 73293357-73293414 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGUGGCUACAGAUUCUCCUUAGCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCUAAACUAUCAAACGCCAUUAUCACACUAAAUAGCUACUGCUAGGCAAUCCUUCCCUCGAUGAGet precursor sequence |
| Structure | 10 20 30 40 50 CGUGGCUACAGAUUCUC- -| GG C UGUCU CUUAGCAG AGCUGU AGUGUGA AAUGGUGUUUG A GGAUCGUC UCGAUA UCACACU UUACCGCAAAC A AGUAGCUCCCUUCCUAAC A^ AA A UAUCA 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | The 5p read is mono-adenylated at the 3p end. There is a second Dicer cut +1 on both arms. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-122_5p |
| mirBase accession | None |
| Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
| Star sequence | Pab-Mir-122_3p* |
| mirBase accession | None |
| Sequence |
36- AACGCCAUUAUCACACUAAAUA -58
Get sequence
|
