MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635957.1: 1427599-1427657 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUCUAAGACUUGAUGCUACCAGUGACUAUGGAGUGUGACAAUGGUGUUUGUAAUCACUGACAUCAAACGCCAUUAUCACACUAAAUAAACACGGCCGCAGGAUUCUGCACAGAUCAU
Get precursor sequence
Structure
        10        20           30        40        50         
UUCUCUAAGACUUGAUGCUA---| A   AC   GG       C           UAAUCA 
                       CC GUG  UAU  AGUGUGA AAUGGUGUUUG      \
                       GG CAC  AUA  UCACACU UUACCGCAAAC      C
UACUAGACACGUCUUAGGACGCC^ -   AA   AA       A           UACAGU 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-122_5p
mirBase accessionNone
Sequence 
0- UGGAGUGUGACAAUGGUGUUUGU -23
Get sequence
Star sequence

Cmi-Mir-122_3p*
mirBase accessionNone
Sequence 
36- AAACGCCAUUAUCACACUAAAUA -59
Get sequence