MirGeneDB ID | Mml-Mir-122 |
Family name |
MIR-122 (all species) |
Seed |
GGAGUGU |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-122a
|
Paralogues |
|
Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Ebu-Mir-122-P3
Ebu-Mir-122-P4
Ete-Mir-122
Gga-Mir-122-P1
Gga-Mir-122-P2
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mmu-Mir-122
Mun-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xla-Mir-122-P5
Xla-Mir-122-P6
Xtr-Mir-122
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (rheMac8_trace) |
chr18: 47923544-47923601 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGGCUGCAGAUUUUCCUUAGCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCUAAACUAUCAAACGCCAUUAUCACACUAAAUAGCUACUACUAGGCAAUCCUUCCCUCGAUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUGGCUGCAGAUUUUC- C -| GG C UGUCU
CUUAG AG AGCUGU AGUGUGA AAUGGUGUUUG A
GGAUC UC UCGAUA UCACACU UUACCGCAAAC A
AAUAGCUCCCUUCCUAAC A A^ AA A UAUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 5p read is mono-adenylated at the 3p end. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Mature sequence |
Mml-Mir-122_5p |
mirBase accession | MIMAT0006180 |
Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-122a-5p
|
Star sequence |
Mml-Mir-122_3p* |
mirBase accession | MIMAT0026813 |
Sequence |
36- AACGCCAUUAUCACACUAAAUA -58
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-122a-3p
|