MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-1788

Family name MIR-1788 (all species)
Seed GCUUGUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709636.1: 31513-31572 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGCUGCCUCCCCCACGCCCGCCGCGUCCUGGGCUUGUUUUCAGUUGCCUGCGGGUUUAUUUGGACGACUCAGGCAGCUAAAGCAAGUCUGGGACGGGUGAGGAGACCCAGCCUGGGGGUC
Get precursor sequence
Structure
        10           20        30        40        50          
AGCUGCCUCCCCCACGCC---|   G     UG          C         CGGGUUUAU 
                     CGCC CGUCC  GGCUUGUUUU AGUUGCCUG         \
                     GUGG GCAGG  CUGAACGAAA UCGACGGAC         U
CUGGGGGUCCGACCCAGAGGA^   -     GU          -         UCAGCAGGU 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentThe 5p arm is 3' monouridylated as well.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-1788_5p
mirBase accessionMIMAT0038325
Sequence 
0- GGCUUGUUUUCAGUUGCCUGCG -22
Get sequence
Co-mature sequence

Ami-Mir-1788_3p
mirBase accessionMIMAT0038326
Sequence 
39- CAGGCAGCUAAAGCAAGUCUG -60
Get sequence