MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-1788

Family name MIR-1788 (all species)
Seed GCUUGUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-1788a
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046070.1: 17174897-17174957 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUUCGUGGGAAGCCACCCACCUGCCUCGGGCUUGUUUUACCUUGCCUGUGGCUCGCAGCGAUGACACACAGGCAGCUGAAGCAAGCCUGAGGCGGAGAUGGGAAGAUACGUCUUUCUGU
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Structure
        10        20          30        40        50        60
AACUUCGUGGGAAGCCAC   C--|                  C  U       GCUCGCA 
                  CCA   CUGCCUCGGGCUUGUUUUA CU GCCUGUG       G
                  GGU   GGCGGAGUCCGAACGAAGU GA CGGACAC       C
UGUCUUUCUGCAUAGAAG   AGA^                  C  -       ACAGUAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-1788_5p
mirBase accessionMIMAT0019561
Sequence 
0- GGCUUGUUUUACCUUGCCUGUG -22
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Co-mature sequence

Pma-Mir-1788_3p
mirBase accessionMIMAT0019562
Sequence 
40- CAGGCAGCUGAAGCAAGCCUG -61
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