MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-1788

Family name MIR-1788 (all species)
Seed GCUUGUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr9: 11551626-11551682 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-1788 chr9: 11551626-11551682 [-] UCSC Ensembl
Mir-375-P2 chr9: 11571983-11572043 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACAAAGUCAACCACUGUCUUGUAUCCGAGGCUUGUUUUAAGUUGCCUGCGAUCUCUUAAUGACUCAGGCAGCUAAAGCAAGUCUGGGAGGCCAGAGACAACACGACAGAAACACA
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Structure
        10          20        30        40        50        
GGACAAAGUCAACCACUG--|  U  A   G            A        CGAUCUC 
                    UCU GU UCC AGGCUUGUUUUA GUUGCCUG       U
                    AGA CG AGG UCUGAACGAAAU CGACGGAC       U
ACACAAAGACAGCACAACAG^  C  G   G            -        UCAGUAA 
     110       100        90        80         70        60
Deep sequencing
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CommentThe 5p arm is 3' monouridylated as well.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-1788_5p
mirBase accessionMIMAT0011294
Sequence 
0- GGCUUGUUUUAAGUUGCCUGCG -22
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Proposed targets TargetScanFish: dre-miR-1788
Co-mature sequence

Dre-Mir-1788_3p
mirBase accessionMIMAT0011295
Sequence 
36- CAGGCAGCUAAAGCAAGUCUG -57
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