MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-1788-P2

Family name MIR-1788 (all species)
Seed AGGCAGC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1788-P1 
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xtr-Mir-1788 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030741.1: 47696710-47696768 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGCCCUAUGCUGUACUCCAGAGUCCCAGGCUUGUUUUAAGUUGCCUGUGAUUGUUGGAAAGAGCACAGGCAGCUAAAGCAAGUCUGGGAAUCUGGAGAUAAAUCUGCUAAACCUGC
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Structure
        10          20        30        40        50         
ACCAGCCCUAUGCUGUA--|      G                A          AUUGUU 
                   CUCCAGA UCCCAGGCUUGUUUUA GUUGCCUGUG      G
                   GAGGUCU AGGGUCUGAACGAAAU CGACGGACAC      G
CGUCCAAAUCGUCUAAAUA^      A                -          GAGAAA 
       110       100        90        80         70        60
Deep sequencing
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-1788-P2_5p*
mirBase accessionNone
Sequence 
0- GGCUUGUUUUAAGUUGCCUGUG -22
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Mature sequence

Xla-Mir-1788-P2_3p
mirBase accessionNone
Sequence 
38- CAGGCAGCUAAAGCAAGUCUG -59
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