MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-1788

Family name MIR-1788 (all species)
Seed AGGCAGC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG12: 11014479-11014536 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACGGUAGGAAAAAUCUCUUGUAUUCUGGGCUUGUUUUAAGUUGCCUGCGAUUUGUUUAAAGACUCAGGCAGCUAAAGCAAGUCUGGAAAGCCGGAGGCAACUUCGAUGGAGACCC
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Structure
        10          20        30        40        50         
AAAACGGUAGGAAAAAU--|   U  A   UG           A        CGAUUUGU 
                   CUCU GU UUC  GGCUUGUUUUA GUUGCCUG        \
                   GAGG CG AAG  CUGAACGAAAU CGACGGAC        U
CCCAGAGGUAGCUUCAACG^   C  A   GU           -        UCAGAAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-1788_5p*
mirBase accessionNone
Sequence 
0- GGCUUGUUUUAAGUUGCCUGCG -22
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Mature sequence

Loc-Mir-1788_3p
mirBase accessionNone
Sequence 
37- CAGGCAGCUAAAGCAAGUCUG -58
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