MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-1788

Family name MIR-1788 (all species)
Seed GCUUGUU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH587013: 13349-13407 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGAUCCCUCUUCGCCCCCUCUGUGUGUCGGGCUUGUUUUCAGUUGCCUGCGGUUGGUUAGAAGGACUCAGGCAGCUAAAGCAAGUCUGGGACGCGCGAGGAGAACCCGCCGGGCAGGG
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Structure
        10         20         30        40        50         
CGGAUCCCUCUUCGCCC-    -|    G             C         CGGUUGGU 
                  CCUC UGUGU UCGGGCUUGUUUU AGUUGCCUG        U
                  GGAG GCGCA GGUCUGAACGAAA UCGACGGAC        A
GGGACGGGCCGCCCAAGA    C^    G             -         UCAGGAAG 
       110       100        90        80         70        60
Deep sequencing
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CommentThe 5p arm is 3' monouridylated as well.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-1788_5p
mirBase accessionMIMAT0037936
Sequence 
0- GGCUUGUUUUCAGUUGCCUGCG -22
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Co-mature sequence

Cpi-Mir-1788_3p
mirBase accessionMIMAT0037937
Sequence 
38- CAGGCAGCUAAAGCAAGUCUG -59
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