Mir-1788

MirGeneDB ID

Gga-Mir-1788

Family name

MIR-1788 (all species)

Seed

GCUUGUU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-1788

Paralogues

Orthologues

Aca-Mir-1788 Ami-Mir-1788 Cli-Mir-1788 Cmi-Mir-1788 Cpi-Mir-1788 Dre-Mir-1788 Ebu-Mir-1788 Gja-Mir-1788 Gmo-Mir-1788 Lch-Mir-1788 Loc-Mir-1788 Mal-Mir-1788 Mun-Mir-1788 Pbv-Mir-1788 Pma-Mir-1788 Spt-Mir-1788 Sto-Mir-1788 Tgu-Mir-1788 Tni-Mir-1788 Xla-Mir-1788-P1 Xla-Mir-1788-P2 Xtr-Mir-1788

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

7: 22354033-22354091 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1788)

Mir-375 7: 22344642-22344699 [+] UCSC Ensembl
Mir-1788 7: 22354033-22354091 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGCUCUUCCCCCCACCCUGCUGUGUCCCGGGCUUGUUUUCCGUUGCCUGCGGUGUGUUGCAGUGACUCAGGCAGCGAAAGCAAGUCUGGGAGGCUGUGGAGAAGCUGCAGGGCAGGCA

Get precursor sequence

Structure

        10          20        30        40        50         
UGGCUCUUCCCCCCACC--|UG U  G                C        CGGUGUGU 
                   C  C GU UCCCGGGCUUGUUUUC GUUGCCUG        U
                   G  G CG AGGGUCUGAACGAAAG CGACGGAC        G
ACGGACGGGACGUCGAAGA^GU U  G                -        UCAGUGAC 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-1788_5p

mirBase accession

MIMAT0007700

Sequence

0- GGCUUGUUUUCCGUUGCCUGCG -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-1788-5p
miRDB: MIMAT0007700

Co-mature sequence

Gga-Mir-1788_3p

mirBase accession

MIMAT0007701

Sequence

38- CAGGCAGCGAAAGCAAGUCUG -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-1788-3p
miRDB: MIMAT0007701