MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-1788

Family name MIR-1788 (all species)
Seed AGGCAGC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 7: 10133597-10133655 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-1788 7: 10133597-10133655 [-] UCSC Ensembl
Mir-375 7: 10147335-10147392 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCUCCCCACCUCACCCCGCUGUCUCCAGGGCUUGUUUUCCGUUGCCUGAGGUUUGUUUCAGUGACUCAGGCAGCGAAAGCAAGUCUGGGAGGCUGCGGAGCCACUGCUGGGAGAGCU
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Structure
        10          20        30        40        50         
ACUCUCCCCACCUCACC--|   U      A            C          GUUUGU 
                   CCGC GUCUCC GGGCUUGUUUUC GUUGCCUGAG      U
                   GGCG CGGAGG UCUGAACGAAAG CGACGGACUC      U
UCGAGAGGGUCGUCACCGA^   U      G            -          AGUGAC 
       110       100        90        80         70        60
Deep sequencing
CommentThere are reads from this locus but inconsistently offset from all other taxa and often with 5' mismatches.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1788_5p* (predicted)
mirBase accessionMIMAT0025407
Sequence 
0- GGCUUGUUUUCCGUUGCCUGAG -22
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Mature sequence

Tgu-Mir-1788_3p (predicted)
mirBase accessionNone
Sequence 
38- CAGGCAGCGAAAGCAAGUCUG -59
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