MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-1788

Family name MIR-1788 (all species)
Seed AGGCAGC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126836.1: 982506-982564 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCUGACCCUUUCUUUCUCUUGGGUUCUGGGCUUGUUUUAAGUUGCCUGUGAUUACAUAGCAGAACUCAGGCAGCUAAAGCAAGUCUGGAAAGCAGGAGUCAAGUACAUCAGGGUGAG
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Structure
        10          20        30        40        50         
ACUCUGACCCUUUCUUU--|     GG   UG           A        UGAUUACA 
                   CUCUUG  UUC  GGCUUGUUUUA GUUGCCUG        U
                   GAGGAC  AAG  CUGAACGAAAU CGACGGAC        A
GAGUGGGACUACAUGAACU^     GA   GU           -        UCAAGACG 
       110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-1788_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUUGUUUUAAGUUGCCUGUG -22
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Mature sequence

Lch-Mir-1788_3p (predicted)

mirBase accessionNone
Sequence
38- CAGGCAGCUAAAGCAAGUCUG -59
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