| MirGeneDB ID | Cmi-Mir-1788 |
|---|
| Family name |
MIR-1788 (all species) |
|---|
| Seed |
GCUUGUU |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-1788
Ami-Mir-1788
Cli-Mir-1788
Cpi-Mir-1788
Dre-Mir-1788
Ebu-Mir-1788
Gga-Mir-1788
Gja-Mir-1788
Gmo-Mir-1788
Lch-Mir-1788
Loc-Mir-1788
Mal-Mir-1788
Mun-Mir-1788
Pbv-Mir-1788
Pma-Mir-1788
Spt-Mir-1788
Sto-Mir-1788
Tgu-Mir-1788
Tni-Mir-1788
Xla-Mir-1788-P1
Xla-Mir-1788-P2
Xtr-Mir-1788
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636070.1: 19404-19464 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAGCAAUGCCGGACUCUCCCUUCGUUCCGGGCUUGUUUAAGUUGCCUGUACGUGUGUGUAUGUGGGACACAGGCAGCUAAAGCAAGCCUGGAAACUGAGAGACAACCGCACUGGAGAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCAGCAAUGCCGGACUC- C CG-| A ACGUGUGUG
UC CUU UUCCGGGCUUGUUU AGUUGCCUGU \
AG GAG AAGGUCCGAACGAA UCGACGGACA U
GGUAGAGGUCACGCCAAC A UCA^ A CAGGGUGUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cmi-Mir-1788_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUUGUUUAAGUUGCCUGUA -21
Get sequence
|
|---|
| Star sequence |
Cmi-Mir-1788_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- CAGGCAGCUAAAGCAAGCCUG -61
Get sequence
|
|---|
