MirGeneDB ID | Aca-Mir-1788 |
Family name |
MIR-1788 (all species) |
Seed |
AGGCAGC |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-1788
|
Paralogues |
|
Orthologues |
Ami-Mir-1788
Cli-Mir-1788
Cmi-Mir-1788
Cpi-Mir-1788
Dre-Mir-1788
Ebu-Mir-1788
Gga-Mir-1788
Gja-Mir-1788
Gmo-Mir-1788
Lch-Mir-1788
Loc-Mir-1788
Mal-Mir-1788
Mun-Mir-1788
Pbv-Mir-1788
Pma-Mir-1788
Spt-Mir-1788
Sto-Mir-1788
Tgu-Mir-1788
Tni-Mir-1788
Xla-Mir-1788-P1
Xla-Mir-1788-P2
Xtr-Mir-1788
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (anoCar2) |
1: 87812135-87812194 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUCUGCAUCAUGUAACCUCCCUGUGCUGGGCUUGUUUUCAGUUGCCUGCGGCUGAUUAAUAGGGACUCAGGCAGCUAAAGCAAGUCUGAUACAUGAAAGGAGAACCAGCAGAAUCCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUCUGCAUCAUGUAA- CCC-| CU C CGGCUGAUU
CCU UGUG GGGCUUGUUUU AGUUGCCUG \
GGA ACAU UCUGAACGAAA UCGACGGAC A
UUCCUAAGACGACCAAGA AAGU^ AG - UCAGGGAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The 5p arm is 3' monouridylated as well. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aca-Mir-1788_5p* |
mirBase accession | MIMAT0021805 |
Sequence |
0- GGCUUGUUUUCAGUUGCCUGCG -22
Get sequence
|
Mature sequence |
Aca-Mir-1788_3p |
mirBase accession | MIMAT0021806 |
Sequence |
39- CAGGCAGCUAAAGCAAGUCUG -60
Get sequence
|