MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-1788

Family name MIR-1788 (all species)
Seed AGGCAGC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold32: 1391518-1391576 [-]
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-1788 scaffold32: 1391518-1391576 [-]
Mir-375 scaffold32: 1406275-1406332 [-]
Precursor
(pre-Mir +30nt flank)
CCCCUCCACACCUAACCACACUGUCUCCGGGGCUUGUUUUCCGUUGCCUGCGGUUUGUUCCAGUGACUCAGGCAGCGAAAGCAAGUCUGGGAGGCUGUGGAGCUGCUGCUGGAAGAGAG
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Structure
        10          20        30        40        50         
CCCCUCCACACCUAACCA--|  U      G            C        CGGUUUGU 
                    CAC GUCUCC GGGCUUGUUUUC GUUGCCUG        U
                    GUG CGGAGG UCUGAACGAAAG CGACGGAC        C
GAGAGAAGGUCGUCGUCGAG^  U      G            -        UCAGUGAC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-1788_5p*
mirBase accessionMIMAT0038700
Sequence 
0- GGCUUGUUUUCCGUUGCCUGCG -22
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Mature sequence

Cli-Mir-1788_3p
mirBase accessionMIMAT0038701
Sequence 
38- CAGGCAGCGAAAGCAAGUCUG -59
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