MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-1788

Family name MIR-1788 (all species)
Seed AGGCAGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1550: 212983-213039 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAUCAUGUCGAUACAAUCUAGCUUUCGAGGCUUGUUUUAAGUUGCCUGCGACUGUAUUUGAACACAGGCAGCUAAAGCAAGUCUGGUAUGCCAGAGACACACCUACUUGGAUCUG
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Structure
        10          20         30        40        50        
AGGAUCAUGUCGAUACAA--   A  UU-| G            A        CGACUGU 
                    UCU GC   UC AGGCUUGUUUUA GUUGCCUG       A
                    AGA CG   GG UCUGAACGAAAU CGACGGAC       U
GUCUAGGUUCAUCCACACAG   C  UAU^ -            -        ACAAGUU 
     110       100        90         80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-1788_5p*
mirBase accessionMIMAT0044124
Sequence 
0- GGCUUGUUUUAAGUUGCCUGCG -22
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Mature sequence

Gmo-Mir-1788_3p
mirBase accessionMIMAT0044125
Sequence 
36- CAGGCAGCUAAAGCAAGUCUG -57
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