| MirGeneDB ID | Cbr-Mir-87-o1 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Seed |
UGAGCAA |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
cbr-mir-87
|
|---|
| Paralogues |
Cbr-Mir-87-o2
|
|---|
| Orthologues |
Bge-Mir-87-P1
Cel-Mir-87-o1
Csc-Mir-87-P1k1
Csc-Mir-87-P1k2
Csc-Mir-87-P1l
Cte-Mir-87-P1
Dgr-Mir-87-P1
Dlo-Mir-87-P1
Gsp-Mir-87
Hru-Mir-87-P1
Isc-Mir-87-P1
Lan-Mir-87-P1
Lgi-Mir-87-P1
Lpo-Mir-87-P1c
Lpo-Mir-87-P1d
Lpo-Mir-87-P1e
Lpo-Mir-87-P1f
Lpo-Mir-87-P1g
Lpo-Mir-87-P1h
Lpo-Mir-87-P1i
Lpo-Mir-87-P1j
Mgi-Mir-87-P1
Ofu-Mir-87-P1
Pau-Mir-87-P1
Pve-Mir-87-P1
Sne-Mir-87
Snu-Mir-87-P1
Tca-Mir-87-P1
|
|---|
| Node of Origin (locus) |
Caenorhabditis
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(CB4) |
V: 8974034-8974098 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAUUUCUCCACAGGUUGUGCCCACCCGGCCGCCUGAUACUUUCGUCUCAACCUCGCUGUCAGAAUGUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACACCCAUACUUUGCUCUGUUGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAUUUCUCCACAGGUU-----| CCCAC - U C U A CGCUGUCA
GUG CCGGC CGCCUGA ACUUU G CUCA CCU \
CAC GGCCG GUGGACU UGAAA C GAGU GGA G
UUGUUGUCUCGUUUCAUACCCA^ AA--- U U - - - UGCUGUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cbr-Mir-87-o1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGCCUGAUACUUUCGUCUCAACCU -24
Get sequence
|
|---|
| Mature sequence |
Cbr-Mir-87-o1_3p |
| mirBase accession | MIMAT0000492 |
|---|
| Sequence |
43- GUGAGCAAAGUUUCAGGUGUGC -65
Get sequence
|
|---|
