MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-87-P1

Family name MIR-87 (all species)
Seed UGAGCAA
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-87-P2 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Csc-Mir-87-P1k1  Csc-Mir-87-P1k2  Csc-Mir-87-P1l  Cte-Mir-87-P1  Dgr-Mir-87-P1  Dlo-Mir-87-P1  Gsp-Mir-87  Hru-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1e  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Mgi-Mir-87-P1  Ofu-Mir-87-P1  Pau-Mir-87-P1  Pve-Mir-87-P1  Sne-Mir-87  Tca-Mir-87-P1 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049318.1: 65885024-65885079 [+]
Precursor
(pre-Mir +30nt flank)
UGGUGUUCUGGAAAAAUGGGUUCUGUUACAAGCCUGAAAUUUCUGCUCAAACCUGGUUUAUCAAGGUGAGCAAAGUUUCAGGAGUGUAACGGGGCUCUCUGGCAACAAGAAGAAUC
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Structure
        10          20        30        40        50         
UGGUGUUCUGGAAAAAU--|            AG          C     AA    GGUU 
                   GGGUUCUGUUACA  CCUGAAAUUU UGCUC  ACCU    \
                   CUCGGGGCAAUGU  GGACUUUGAA ACGAG  UGGA    U
CUAAGAAGAACAACGGUCU^            GA          -     --    ACUA 
    110       100        90        80         70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Snu-Mir-87-P1_5p*
mirBase accessionNone
Sequence 
0- AGCCUGAAAUUUCUGCUCAAACCU -24
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Mature sequence

Snu-Mir-87-P1_3p
mirBase accessionNone
Sequence 
35- GUGAGCAAAGUUUCAGGAGUG -56
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