MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-87-P1c

Family name MIR-87 (all species)
Seed UGAGCAA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-87-P1d  Lpo-Mir-87-P1e  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Cte-Mir-87-P1  Dgr-Mir-87-P1  Dlo-Mir-87-P1  Gsp-Mir-87  Hru-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Mgi-Mir-87-P1  Ofu-Mir-87-P1  Pau-Mir-87-P1  Pve-Mir-87-P1  Sne-Mir-87  Snu-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666175.1: 461346-461406 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGGCUCCUACGAAAUCUGUUGGCCCUGUGUGCCCGAAACUUUGGCUCAACCUCAGUUUGUUGAACAGGUGAGCAAAGUUUCAGGUGUGUCGGGUUGGCCGGAAAACUGCGAUAAUCAGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUCGGCUCCUACGAAAU--|U  UG    U UG    C         G    A   CAGUUU 
                   C GU  GCCC G  UGCC GAAACUUUG CUCA CCU      \
                   G CG  UGGG U  GUGG CUUUGAAAC GAGU GGA      G
AGACUAAUAGCGUCAAAAG^C  GU    C GU    A         -    -   CAAGUU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-87-P1c_5p*
mirBase accessionNone
Sequence 
0- GUGCCCGAAACUUUGGCUCAACCU -24
Get sequence
Mature sequence

Lpo-Mir-87-P1c_3p
mirBase accessionNone
Sequence 
39- GUGAGCAAAGUUUCAGGUGUGU -61
Get sequence