MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-87-P1e

Family name MIR-87 (all species)
Seed UGAGCAA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Cgi-Mir-87-P1  Cte-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665700.1: 1212340-1212400 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAAUUAACGUAUCAUCUGUCAACCUUAUGUGCCCGAAACUUUGACUCAACCUGUGUACGUUUAACAGGUGAGCAAAGUUUCAGGUGUGUCGGGUUGGCUAAGAAGCUGCGAUGUCCAAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUUAAUUAACGUAUCAUCU--|       U   UG  C         A    A   GUGUAC 
                     GUCAACCU AUG  CC GAAACUUUG CUCA CCU      \
                     CGGUUGGG UGU  GG CUUUGAAAC GAGU GGA      G
GAACCUGUAGCGUCGAAGAAU^       C   GU  A         -    -   CAAUUU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-87-P1e_5p*

mirBase accessionNone
Sequence
0- GUGCCCGAAACUUUGACUCAACCU -24
Get sequence
Mature sequence

Lpo-Mir-87-P1e_3p

mirBase accessionNone
Sequence
39- GUGAGCAAAGUUUCAGGUGUGU -61
Get sequence